|METATOOL 5.1||Program for computing the nullspace matrix, elementary modes and other |
structural properties of biochemical reaction networks. Octave and Matlab version.
Previous version 5.0
|METATOOL 4.x||Program for computing the nullspace matrix, elementary modes and other structural|
properties of biochemical reaction networks. Stand-alone version.
|BlockDiag||Program for computing and block-diagonalizing the nullspace matrix to the |
stoichiometriy matrix of a chemical reaction network.
|OptiMode||Program for detecting the elementary mode with the highest molar yield for a specified|
substrate - product pair from the output file of METATOOL.
|Separator||Program for decomposing of large biochemical networks in to smaller ones.|
|Reducing the number of modes
||A program to calculate elementary modes for the complete variety of external and |
internal metabolites and a program to calculate the approximated minimal number of modes
|NAD+ metabolism||Visualisation of all the elementary modes computed with Metatool 5.1 in the analysis of the
NAD+ metabolic network. More details about this analysis can be found in
de Figueiredo et al. 2011. Additional information about each elementary mode is displayed
in the accompanying table.